Web Directory

» Allen Brain Atlas
   Database of gene expression patterns in the mouse brain.
   http://www.brain-map.org

» ArrayExpress
   Database of gene expression and other microarray data at the European Bioinformatics Institute (EBI), located at the Wellcome Trust Foundation in Cambridge, UK.
   http://www.ebi.ac.uk/arrayexpress

» BATEx
   Data base for gene expression data from plants.
   http://pgrc.ipk-gatersleben.de/batex/

» Exploring the Metabolic and Generic Control of Gene Expression
   Database with the data for the experiments in the paper - DeRisi et. al. Science 278: 680-686. Includes text files that can be downloaded. The original paper requires a subscription fee.
   http://cmgm.stanford.edu/pbrown/explore/

» Gene Expression Machine Learning Repository
   A collection of gene expression datasets that can be used for benchmarking gene expression oriented machine learning algorithms.
   http://gemler.fzv.uni-mb.si

» Gene Expression Omnibus
   Database of gene expression data from NCBI (National Center for Biotechnical Information). Includes a definable search by different characteristics.
   http://www.ncbi.nlm.nih.gov/geo/

» Gene Expression in Tooth
   Database on the expression of different genes in the developing tooth.
   http://bite-it.helsinki.fi/

» GeneExpress
   Designed for analysis of genomic regulatory sequences of higher eukaryotes. Includes several databases and programs for visualization of the information contained. From the Laboratory of Theoretical Genetics of the Institute of Cytology and Genetics of Si
   http://wwwmgs.bionet.nsc.ru/mgs/systems/geneexpress/

» GenePaint
   Database of gene expression patterns in the mouse embryo. From Max-Planck-Institute for Biophysical Chemistry, Dept. Genes and Behavior, Göttingen, Germany
   http://www.genepaint.org

» Genevestigator
   Multi-organism microarray database and expression meta-analysis tool.
   http://www.genevestigator.ethz.ch

» Genomics Portals
   Integrative platform for analyzing a large collection of genome-scale datasets (more than 400 million data points).
   http://www.GenomicsPortals.org

» IRES Database
   Database on gene expression with information on Internal Ribosome Entry Sites IRES. From INSERM, the French Institute of Health.
   http://ifr31w3.toulouse.inserm.fr/iresdatabase

» IRESite: The Database of Experimentally Verified IRES Structures
   This database contains information about the experimentally studied IRES (Internal Ribosome Entry Site) segments.
   http://www.iresite.org

» Kyoto Encyclopedia of Genes and Genomes (KEGG)
   Graphical and hypertext-based information from Kanehisa Laboratories in the Bioinformatics Center of Kyoto University, Japan.
   http://www.genome.ad.jp/kegg/

» MERNA
   A data base of metal binding sites of RNA, from the Holbrooke Laboratory, Lawrence Berkeley National Laboratory, Berkeley, California, USA.
   http://merna.lbl.gov/

» Mirage
   Information methodologies, tools, and technologies relating to the study of gene expression and signal transduction. From the Institute for Transcriptional Informatics (IFTI), USA.
   http://www.ifti.org/

» Oncomine
   Compendium of cancer transcriptome profiles with analysis engine.
   http://www.oncomine.org

» Polbase
   Repository of biochemical, genetic, and structural information about DNA polymerases.
   http://polbase.neb.com/

» RNase P Database
   A compilation of RNase P sequences, sequence alignments, secondary structures, three-dimensional structures, and accessory information.
   http://www.mbio.ncsu.edu/RNaseP/

» Ribosomal Database Project
   From Center for Microbial Ecology, Michigan State University, USA
   http://rdp.cme.msu.edu/

» Rice Transcription Factor Database
   RiceTFDB is a public database of rice genes involved in transcriptional control. From the University of Potsdam, Berlin, Germany.
   http://ricetfdb.bio.uni-potsdam.de/

» Stanford Microarray Database
   Data from microarray experiments, and the corresponding image files. From Stanford University, USA.
   http://genome-www5.stanford.edu/

» StemBase
   StemBase is a database containing gene expression data from human and mouse stem cells and their derivatives.
   http://www.stembase.ca

» SymAtlas
   Database on gene function and structure, from the Genomics Institute of the Novartis Research Foundation.
   http://symatlas.gnf.org

» The Database of Rice Transcription Factors (DRTF)
   Free of charge database of transcription factors of rice. From CBI, Peking University, China.
   http://drtf.cbi.pku.edu.cn

» WormBase
   Data bases on the genetics of C elegans and related nematodes.
   http://www.wormbase.org/